2025年 プレ会議ワークショップ
Bio-IT Worldでは、4月2日月曜日の午前と午後に、プレ会議ワークショップを開催します。このワークショップは、指導的かつインタラクティブなもので、特定のトピックに関する詳細な情報を提供します。1対1の交流が可能で、木曜日〜金曜日に開催される主要な会議トラックでは取り上げられないような、技術的な側面を探る絶好の機会となっています。
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2025年4月2日(水) 9:00 - 12:00 pm
W1: FAIRification Lab-Applying FAIR Principles to Enhance Data Stewardship
W1: FAIR化ラボ - FAIR原則の適用で、データスチュワードシップを強化
FAIRification Lab-Applying FAIR Principles to Enhance Data Stewardship
Munazah Andrabi, PhD, Data & Community Manager, The University of Manchester
Ishwar Chandramouliswaran, Program Director, Office of Data Science Strategy, NIH
Andrew Hasley, PhD, Program Analyst, Office of Data Science Strategy, NIH
Nick Juty, PhD, Senior Research Technology Manager, eScience Lab, University of Manchester
Nick Lynch, PhD, Founder & CTO, Curlew Research; Member, FAIRplus Consortium
Giovanni Nisato, PhD, Consultant, Project Manager FAIR implementation, Pistoia Alliance
Philippe Rocca-Serra, PhD, Senior Director FAIR Collaborations R&D, AstraZeneca, Cambridge UK; Associate Member of Faculty, Oxford e-Research Centre, University of Oxford
Susanna-Assunta Sansone, PhD, Professor of Data Readiness, Department of Engineering Science; Academic Lead for Research Practice, University of Oxford
GOALS:
The workshop will expose participants to best practices and guidelines to make data FAIR and walk them through step-by-step recipes to make research data findable, accessible, interoperable, and reusable.
OUTCOMES:
Participants will get hands-on experience of FAIR planning and adoption using example research datasets. Working in groups, participants will be able to experience the FAIRification journey and ask questions of the FAIR community experts. Participants will leave with an understanding of the FAIR framework, ability to conduct a FAIR assessment, and tools to improve the FAIRness of their research data.
AUDIENCE AND PREREQUISITES:
The workshop will serve those seeking to deliver value from data management best practices at all stages in their “FAIRification” journey. No prerequisites necessary to register for this workshop.
AGENDA:
9:00 am Organizer's Welcome Remarks
9:05 am Chairperson’s Remarks
Ishwar Chandramouliswaran, Program Director, Office of Data Science Strategy, NIH
Nick Lynch, PhD, Founder & CTO, Curlew Research; Member, FAIRplus Consortium
9:15 am Short/Lightning Talks - Part 1
• FAIR Assessment - Overview of Community Activities
Susanna-Assunta Sansone, PhD, Professor of Data Readiness, Department of Engineering Science; Academic Lead for Research Practice, University of Oxford
• Pistoia Alliance’s FAIR Maturity Matrix
Giovanni Nisato, PhD, Consultant, Project Manager FAIR implementation, Pistoia Alliance
At any given time, organizations are at varying stages of their FAIR implementation journeys, making it challenging to benchmark the level of FAIRness achieved. While several FAIR data maturity models and metrics exist, until recently, there was no comprehensive maturity assessment model tailored for implementing FAIR data principles at the organizational level in life sciences. To address this gap, the Pistoia Alliance FAIR Implementation Project developed the FAIR Maturity Matrix, a framework collaboratively designed by over 20 experts from leading pharmaceutical and life science organizations, as well as consultancies.
The matrix identifies seven dimensions critical to FAIR implementation: Data, Leadership, Strategy, Roles, Processes, Knowledge, Tools and Infrastructure. These dimensions are complementary rather than hierarchical, ensuring flexibility in application. The model defines six maturity levels:
• 0: Life is unFAIR: Lack of awareness.
• 1: Started the FAIR journey: Awareness initiated.
• 2: Getting FAIR: Pilot implementations underway.
• 3: Pretty FAIR: Transitioning to good and best practices.
• 4: Really FAIR: Reflecting best industry practices to date.
• 5: FAIRest of them all: Aspirational goals yet to be realized.
Descriptive rather than prescriptive, the FAIR Maturity Matrix equips stakeholders with a consistent framework to assess, qualify, and measure organizational progress. It supports effective management of advancements toward FAIR compliance, enables benchmarking both across organizations and within internal departments, and fosters a shared understanding of FAIR maturity. The first version of the FAIR Maturity Matrix was released in March 2024 and is accessible at fairmm.pistoiaalliance.org.
• FAIRification Journey Using the FAIRification Framework
Nick Juty, PhD, Senior Research Technology Manager, eScience Lab, University of Manchester
• RDMKit
Munazah Andrabi, PhD, Data & Community Manager, The University of Manchester
• FAIR CookBook
Philippe Rocca-Serra, PhD, Senior Director FAIR Collaborations R&D, AstraZeneca, Cambridge UK; Associate Member of Faculty, Oxford e-Research Centre, University of Oxford
10:15 am Networking Coffee Break
10:30 am Group Activity - Part 2
All session speakers
Part 2 begins with a brief overview of instructions for the activity, followed by a break to facilitate group formation and discussions. Participants will then engage in a hands-on collaborative session of FAIRification group work, applying best practices to real-world data scenarios. Afterward, a break allows teams to come back together and prepare for report-outs. The workshop concludes with a dynamic session where groups present their findings and engage in open discussions, fostering knowledge exchange and actionable insights.
11:55 am Closing Remarks
12:00 pm End of Workshop
INSTRUCTOR BIOGRAPHIES:
Munazah Andrabi, PhD, Data & Community Manager, The University of Manchester
Ishwar Chandramouliswaran, Program Director, Office of Data Science Strategy, NIH
Andrew Hasley, PhD, Program Analyst, Office of Data Science Strategy, NIH
Nick Juty, PhD, Senior Research Technology Manager, eScience Lab, University of Manchester
Nick Lynch, PhD, Founder & CTO, Curlew Research; Member, FAIRplus Consortium
Giovanni Nisato, PhD, Consultant, Project Manager FAIR implementation, Pistoia Alliance
Philippe Rocca-Serra, PhD, Senior Director FAIR Collaborations R&D, AstraZeneca, Cambridge UK; Associate Member of Faculty, Oxford e-Research Centre, University of Oxford
Susanna-Assunta Sansone, PhD, Professor of Data Readiness, Department of Engineering Science; Academic Lead for Research Practice, University of Oxford
W2: Foundations of Quantum Computing in Drug Discovery
W2: 創薬における量子コンピューティングの基礎
Quantum Computing and Its Transformative Impact on Drug Discovery and Pharma Innovation
Christopher Bishop, Chief Reinvention Officer, Improvising Careers
This workshop explores the growing role of quantum technologies in the pharmaceutical industry, focusing on real-world applications of quantum computing and sensing in drug discovery and development. Key topics include strategies to address the "harvest now, decrypt later" threat through post-quantum cryptography, the implications of quantum and AI integration for pharma data and intellectual property, and methods to build a quantum-ready workforce within pharmaceutical organizations. Join us to uncover how quantum technologies can revolutionize pharma innovation and reshape the future of healthcare.
INSTRUCTOR BIOGRAPHIES:
Christopher Bishop, Chief Reinvention Officer, Improvising Careers
2025年4月2日(水) 1:15 - 4:15 pm
W4: Making Data AI-Ready
W4: データをAI-Ready化
TOPICS TO BE COVERED:
Advancing AI-Ready Data in Life Sciences: Insights from Pistoia Alliance’s AI, Ontology, and FAIR Initiatives
Giovanni Nisato, PhD, Consultant, Project Manager FAIR implementation, Pistoia Alliance
The Pistoia Alliance collaborative portfolio is advancing AI-data readiness through its ontology projects, AI, and FAIR initiatives. A key resource in this endeavor is the FAIR Maturity Matrix, a framework designed to help organizations assess and enhance their FAIR capabilities which are instrumental to generate a solid foundation of AI-ready data. The Alliance’s IDMP Ontology enhances the ISO IDMP standard, enabling semantic interoperability. Additionally, the Pharma General Ontology project provides a core framework to enhance interoperability between FAIR data sets across the pharmaceutical industry. The Artificial Intelligence & Machine Learning Community focuses on defining best practices for AI and machine learning in life-sciences research. This includes developing a Best Practices Toolkit for Good Machine Learning Practices and educating members through webinars and conference presentations. By leveraging these resources and initiatives, organizations can systematically evaluate their current data practices, identify areas for improvement, and implement strategies to achieve higher levels of AI data maturity. This progression enhances data quality and accessibility, ensuring that AI applications are built on a robust and reliable data foundation which is a must in a highly regulated environment.
FAIR by Design
Anastasios Moresis, PhD, Senior Scientist, Roche Pharma
In vivo preclinical animal studies are crucial for discovering new therapeutics. However, their complexity often leads to the creation of multiple localized solutions for data capture, hindering data exchange and reuse. This poses significant challenges for data scientists aiming to gain disease insights and advance discoveries. FISH (FAIR* in vivo data SHaring) platform is a "FAIR by design" system that consolidates previously siloed solutions into a unified platform, providing standardized and context-rich metadata and results for animal studies. Utilizing globally unique persistent resolvable identifiers (GUPRIs), FISH enables seamless data access, identification, and exchange. The platform employs semantic models and standardized terminologies to ensure structured, consistent, and machine-actionable data capture across teams. Each component integrates smoothly with existing registration or Laboratory Information Management Systems (LIMS), ensuring clear ownership, entity validation, and minimizing data duplication. By providing FAIRified data, FISH unlocks the full potential of animal studies, facilitating data reuse and efficient use of ML/AI algorithms or automation of lab workflows. This approach enhances reproducibility of in vivo studies and enables the repurposing of animal data. Ultimately, it increases the probability of successful Entry into Human (EiH) trials and significantly reduces the need for additional animal testing. (FAIR: Findable, Accessible, Interoperable, Reusable)
Wrangling Health-Related Data for Analytics and AI Workloads
Fernanda Foertter, MSc, Oakridge National Lab
Preparing data for AI workloads is to put it mildly, awful. Health data poses an even greater difficulty from access to formats to regulatory restrictions. This talk will explore the complexities of data preparation for AI with examples coming from several people surveyed and interviewed. We will discuss a few examples from medical imaging to text, and cover common tools and methods used today in the broader context that could be leveraged by health data science practitioners.
Reducing Data Fragmentation
Angelika Fuchs, Chapter Lead Data Products and Platforms, pRED Data & Analytics, Roche Diagnostics GmbH
Across the pharma industry, companies sit on massive amounts of data but can't leverage it for meaningful AI application as the data is processed and stored in a historically grown, siloed system landscape. We'll discuss approaches to overcome that systemic challenge through a combination of technology, culture, and mindset.
PageRank for Gene-Disease Association Ranking on AbbVie's R&D Convergence Hub: ARCH Graph
Ryan Chandler, PhD, Knowledge Graph Engineer, Research and Development, AbbVie
At AbbVie, the PageRank algorithm has emerged as a powerful method for drawing high-quality associations between genes and diseases. By leveraging our diverse and expertly curated R&D knowledge graph, ARCH, the relatively simple PageRank algorithm provides association rankings that surpass those of other world-class, purpose-built knowledge bases. This talk will focus on the knowledge structure, curation, and our next-generation analytical strategies. Some main points are: The importance of normalized and curated propositional knowledge; Weighting for clinical and novel relevance; The next generation of analytics beyond PageRank.
INSTRUCTOR BIOGRAPHIES:
Giovanni Nisato, PhD, Consultant, Project Manager FAIR implementation, Pistoia Alliance
Anastasios Moresis, PhD, Senior Scientist, Roche Pharma
Fernanda Foertter, MSc, Oakridge National Lab
Angelika Fuchs, Chapter Lead Data Products and Platforms, pRED Data & Analytics, Roche Diagnostics GmbH
Ryan Chandler, PhD, Knowledge Graph Engineer, Research and Development, AbbVie
W5: Advanced Applications and Roadmap for Quantum Computing in Pharma
W5: 製薬における量子コンピューティングの先端アプリケーションとロードマップ
Advanced Applications and Roadmap for Quantum Computing in Pharma
Sara Dolcetti, Vice President of Business Development, Qubit Pharmaceuticals
Building on the foundational concepts introduced in the morning workshop, this advanced workshop explores real-world case studies from industry leaders in hardware innovation, pharma quantum teams, and virtual drug discovery. Attendees will delve deeper into breakthrough applications and learn how to overcome current challenges in adopting quantum technologies. The session concludes with an interactive roundtable discussion on the future roadmap, offering participants an opportunity to collaborate on shaping the next generation of quantum-driven drug development.
INSTRUCTOR BIOGRAPHIES:
Sara Dolcetti, Vice President of Business Development, Qubit Pharmaceuticals
W6: AI in Antibody Design
W6: 抗体デザインにおけるAI
AI in Antibody Design
Rahmad Akbar, PhD, Senior Data Scientist, Antibody Design, Novo Nordisk
Magnus Haraldson Høie, Senior ML Engineer, BioLib
Artificial intelligence is a promising tool for tackling challenging drug targets. This workshop will discuss AI’s role in accelerating the discovery and design process, including data integration, data generation, predictive algorithms, and applications.
INSTRUCTOR BIOGRAPHIES:
Rahmad Akbar, PhD, Senior Data Scientist, Antibody Design, Novo Nordisk
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